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* The session as the Analysis column sees it (§18): the host the workspace
* reads it through, the context a task is priced and run against, and when
* the workspace is built, refreshed and put down.
*
* `analysis/workspace.ts` is the workspace — a runner, a worker, the panel and
* the drawer — loaded in a chunk of its own the first time a file is open, and
* every question it asks is answered from facts the session holds: which file
* is open and which map is starred, the framing and the block on screen, the
* circles and origins declared on the file, the maps beside it that a task can
* be run against or compared with. This is where those answers are put in the
* workspace's terms, and they are read fresh each time they are asked.
*
* Separate from `Session` because it is the one part of it that speaks the
* analysis module's language — framings, run targets, contexts — and the
* session's other sections never do. It holds nothing but the workspace and
* whether its chunk is in flight.
*/
import { buildAnalysisContext } from '../analysis/context'
import type { RunTarget } from '../analysis/runner'
import { readsMap, type AnalysisContext, type AnalysisFraming, type AnalysisTask } from '../analysis/types'
import type { AnalysisWorkspace, AnalysisWorkspaceHost } from '../analysis/workspace'
import { LEAD_MAP } from '../annotations/placement'
import { browsingBinsize } from '../genome/assembly'
import type { AnalysisFacts } from '../panels/MapPanel'
import { fileBaseLabel } from '../ui/labels'
import { rungsOf } from '../ui/refine'
import type { OpenResult, OrientationSummary, PairsBinning } from '../worker/protocol'
import type { PairStats } from '../pairs/stats'
import type { Session } from './Session'
/**
* What the Analysis column says while a deck has no map starred (§18.1): one
* sentence, above every greyed row and in Run's refusal. The 1D tasks read no
* map, so they are the ones left to run, and the sentence says so rather than
* leaving a reader to wonder why one card is not greyed.
*/
const NO_STAR_TASKS =
'No map is starred, so only the 1D tasks can run: every other task reads one map, and the star ' +
'is how it is named. Star a map in its heading to run them.'
/**
* A framing with the reader's circular declarations attached.
*
* A free function rather than a method, and applied at the *session* level
* rather than in the panel, because the declaration is about the **file** while
* a panel knows about the one sequence it is showing. A task run from a
* whole-genome view on a file with three circular plasmids has to measure all
* three of them the short way round, and a framing carrying only what happened
* to be on screen would give one answer from one view and another from another
* (SPECS §8.15).
*
* `null` in, `null` out: a session with no block on screen has no framing, and
* a declaration does not make one.
*/
function withCircularNames(
framing: AnalysisFraming | null,
names: readonly string[],
origins: Readonly<Record<string, number>> = {},
): AnalysisFraming | null {
if (framing === null) return framing
const hasOrigins = Object.keys(origins).length > 0
if (names.length === 0 && !hasOrigins) return framing
return {
...framing,
...(names.length === 0 ? {} : { circular: names }),
// The declared origins travel beside the circles they are on, for the same
// reason: facts about the molecule that change what an arm-reading task
// computes, so they belong in its provenance (§8.15).
...(hasOrigins ? { origins: { ...origins } } : {}),
}
}
/**
* The cell set of a map, for the analysis worker's own mount of it.
*
* Spread rather than returned, so a file with no cells contributes no key at
* all: `cells: undefined` on the request would be a field the protocol has to
* mean something by, and *absent* already means the only thing it could —
* every cell, which is what an scool with nothing ticked draws.
*/
function cellsOfMap(info: OpenResult): { cells?: readonly string[] } {
return info.cells.length === 0 ? {} : { cells: info.activeCells }
}
/**
* How this map was binned, where it was imported from a `.pairs` (§3.7).
*
* The second half of what a second mount needs, beside the cells. A contact list
* has no resolution of its own, so the analysis worker opening the same file is
* refused with the question the reader already answered in a dialog before the
* map existed — and every §18 task on an imported map failed there. The answer
* travels with the target instead.
*/
function binningOfMap(info: OpenResult): {
binning?: PairsBinning
orientation?: OrientationSummary
pairsStats?: PairStats
} {
if (info.pairs === undefined) return {}
return {
binning: info.pairs.binning,
...(info.pairs.orientation === null ? {} : { orientation: info.pairs.orientation }),
// And what `pairtools stats` counted in the same pass, which Pairs QC draws
// as it draws the curves: from the import, with nothing read again.
...(info.pairs.stats === null ? {} : { pairsStats: info.pairs.stats }),
}
}
export class SessionAnalysis {
/**
* The Analysis panel, the drawer and the synthetic tracks card (§18).
*
* One object for all three, because they share a runner and a worker and are
* created and destroyed together with the file — see `analysis/workspace.ts`
* for why the wiring lives there rather than adding three hundred lines here.
* `null` until a file is open, and dropped with it.
*/
workspace: AnalysisWorkspace | null = null
/** Set while the workspace's chunk is in flight, so it is fetched once. */
private loading = false
constructor(private readonly session: Session) {}
/**
* Build, refresh or drop the analysis surfaces to match what is open.
*
* Called after every view mount, because two of the four things a task needs
* are properties of the picture rather than of the file: the framing it will
* be a record of, and whether there is a block in memory cheap enough to hand
* over instead of re-reading (§18.3, §18.4). A table view has neither, and the
* panel has to be able to say so.
*
* The workspace itself outlives a navigation — it holds a worker and possibly
* a running job, and §18.3 is explicit that a job survives clicking a
* chromosome — so it is built once per file and only *refreshed* here.
*/
sync(): void {
// Keyed on the *context* rather than on a file, because a 1D browser session
// has no file and still has three tasks it can run (§5.8). What decides the
// column is whether there is anything at all to analyse.
if (this.context() === null) {
this.workspace?.destroy()
this.workspace = null
this.session.setAnalysis([])
this.session.drawerHost.replaceChildren()
return
}
if (this.workspace === null) {
void this.load()
return
}
this.paint(this.workspace)
}
/**
* Fetch the analysis surfaces, the first time a file is open.
*
* A dynamic import, in the idiom `ui/FilePicker.ts` already uses for the S3
* buckets card, and for a reason §18.3 states about the *worker* and which is
* no less true of the *bundle*: a reader who never opens the panel should pay
* nothing for it. Statically imported, the drawer, the plot renderers, the
* form and the two writers were 75 kB of the main chunk — a quarter of it —
* carried by every session including the ones that only ever look at a map.
*
* The cost is that the column appears a frame or two after the view. That is
* the right trade here: the panel is not what a reader is looking at when a
* file opens, and nothing else waits on it.
*/
private async load(): Promise<void> {
if (this.loading) return
this.loading = true
try {
const { AnalysisWorkspace } = await import('../analysis/workspace')
// Everything below is re-checked because an await is a gap: the tab may
// have been closed, or the file replaced, while the chunk was in flight.
if (this.session.destroyed || this.context() === null || this.workspace !== null) return
this.workspace = new AnalysisWorkspace(this.workspaceHost())
// The workspace brings its own carried rows back through the same `begin`
// an import goes through, so they arrive on the lead like everything else
// — and a computed row's map is exactly the fact a batch existed to
// record. The snapshot is still here, so it is applied again over what the
// workspace has just added ({@link Session.adoptCarriedLanes}).
this.session.adoptCarriedLanes()
this.paint(this.workspace)
} catch {
// A chunk that will not load is a viewer with no Analysis column, which
// is a state the shell already handles — every other panel can be absent
// too. Not worth an error screen over a feature nothing else depends on.
} finally {
this.loading = false
}
}
private paint(analysis: AnalysisWorkspace): void {
analysis.refresh()
// The column carries the list; the drawer floats over the body and is the
// shell's to place, which is why the two are separate hosts.
this.session.setAnalysis(analysis.hasTasks ? [analysis.panelEl] : [])
this.session.drawerHost.replaceChildren(analysis.drawerEl)
}
/** The callbacks `AnalysisWorkspace` reads the session through. */
private workspaceHost(): AnalysisWorkspaceHost {
return {
memoryKey: (uri) => this.session.memoryKey(uri),
source: (task) => {
const starred = this.starredFacts(task)
if (starred !== null) {
return {
uri: starred.uri,
source: starred.source,
...cellsOfMap(starred.info),
...binningOfMap(starred.info),
...(this.session.deck.grid?.starredPanel?.resampleTarget() ?? {}),
// What a plain Run names the map it measured (§16.10), as a batch
// names each of its maps (`readyTargets`).
label: this.session.mapLabel(starred.uri),
}
}
const file = this.session.file
if (file !== null) {
// The ticked cells, so a task measures the map that is drawn rather
// than the pseudo-bulk of every cell in the file (§3.8). The analysis
// worker mounts the file for itself and would otherwise have no way to
// know a selection exists.
return {
uri: file.uri,
source: file.source,
...cellsOfMap(file.info),
...binningOfMap(file.info),
...this.session.resampleOf(this.session.reader),
...(this.session.lens === null ? {} : { edit: this.session.lens.edit }),
label: this.session.mapLabel(file.uri),
}
}
// **The genome, where there is no map.** Three tasks run entirely on
// loaded tracks and a 1D browser session is exactly where a reader has
// the tracks and not the matrix (§18.3) — `context` says so and
// builds them a context, and the runner answers a missing framing with
// one over the tracks. This was the last line still assuming a matrix:
// with none, every one of the three failed as *nothing is open*, in the
// session shape they were written for.
//
// Nothing mounts this. A track-only chain never opens a file in the
// analysis worker (`AnalysisRunner.mount`), so what the pair is for is
// the record: a result names the file it is a measurement of, and here
// that is the genome the tracks were loaded against.
const assembly = this.session.assembly
const source = this.session.assemblySource
return assembly === null || source === null
? null
: { uri: assembly.uri, source }
},
context: (task) => this.context(task),
// Read fresh on every call rather than cached: `Run` takes the framing at
// the instant it is pressed, and a cached one would be a record of
// wherever the reader happened to be when the drawer opened.
framing: () => {
const starred = this.session.deck.grid?.starredPanel ?? null
if (starred !== null) {
const facts = starred.analysisFacts()
const framed = facts === null ? null : (starred.map?.analysisFraming(facts.uri) ?? null)
return this.session.withEditOf(
withCircularNames(
framed,
this.session.circularStore()?.list() ?? [],
this.session.originStore()?.record() ?? {},
),
)
}
const file = this.session.file
const panel = this.session.current?.panel
return file === undefined || file === null || panel === undefined
? null
: this.session.withEditOf(
withCircularNames(
// At the resolution the reader added, where the map is drawn at
// one (§3.4): the framing every task on it is run at.
panel.analysisFraming(file.uri, this.session.analysisGrid()),
this.session.circularStore()?.list() ?? [],
this.session.originStore()?.record() ?? {},
),
)
},
block: () => {
const starred = this.session.deck.grid?.starredPanel ?? null
if (starred !== null) return starred.map?.analysisBlock() ?? null
// None at a resolution the reader added: the runner reads the map summed
// (§3.4), and the block drawn is another sum of it.
if (this.session.analysisGrid() !== null) return null
return this.session.current?.panel?.analysisBlock() ?? null
},
store: () => this.session.annotations?.store ?? null,
// The same object both surfaces draw groups from, so a suggestion a task
// makes about its own set (§18.11) means the same thing beside the map and
// in the 1D browser.
groups: () => this.session.annotations?.groups ?? null,
// The one result that goes to a table rather than to the drawer (§3.8).
cellMeasurements: (uri, table) => this.session.adoptCellMeasurements(uri, table),
// The origins an Origin and terminus run placed, into the declarations.
originsFound: (uri, origins) => this.session.adoptOrigins(uri, origins),
// The star, so a measurement lands on the picture it was measured from.
targetMap: () => this.session.deck.grid?.starredMap ?? LEAD_MAP,
// A deck the reader has left with no map starred has no file for a task
// that reads a map to run against, and none is guessed for them (§18.1).
// The 1D tasks read only the tracks, and the column and drawer let them by.
blocked: () => {
const deck = this.session.deck.grid
return deck !== null && deck.starredMap === null ? NO_STAR_TASKS : null
},
/**
* Every map on screen that can be run against **right now**, lead first.
*
* A companion appears once it has read the two tables an analysis needs,
* and the read is kicked off here. That makes this the *synchronous*
* answer — what the drawer can price, order results by and find the star
* in — and it is deliberately not what a batch runs on: see
* {@link allTargetsReady}, which waits.
*/
allTargets: () => this.readyTargets({ start: true }),
/**
* The same list, once every map still opening has answered.
*
* This is what **Run on all maps** goes through, and it exists because the
* synchronous answer above quietly ran on fewer maps than the button said.
* A companion is a file and a worker: it opens to draw a picture, and the
* two tables an analysis needs are a further pair of reads only a starred
* or batched panel ever makes (`panels/MapPanel.ts`). So on a freshly
* opened deck the first press found three of four ready, ran three, and
* left the fourth reading — with nothing on screen saying so, since the
* result that never came looks exactly like the result of a task that had
* nothing to say. Pressing again worked, which made it look like the file.
*
* Awaited rather than polled, and every panel at once rather than in turn:
* these are two small reads per file against workers that already exist.
* A panel that *cannot* answer — a refusal, a file that will not open —
* settles without facts and is simply not in the list, which is the same
* answer it gave before and the one its own note already explains.
*/
allTargetsReady: async () => {
await Promise.all(
(this.session.deck.grid?.analysable() ?? [])
.filter(({ panel }) => panel.analysisFacts() === null)
.map(({ panel }) => panel.prepareAnalysis(() => this.workspace?.refresh())),
)
if (this.session.destroyed) return []
return this.readyTargets({ start: false })
},
/**
* How many maps a batch will *end up* covering, ready or not.
*
* What the button counts, and not `allTargets().length`: a deck of four
* with one still opening offered "run on all 3 maps" and then ran four,
* which is the button lying about the smaller number rather than the
* larger. Every map in the grid is going to be run on — {@link
* allTargetsReady} waits for them — so every map in the grid is counted.
*/
targetCount: () =>
(this.session.file === null ? 0 : 1) + (this.session.deck.grid?.analysable().length ?? 0),
annotations: () => this.session.annotations?.client ?? null,
// Taken rather than read: the rows belong to the first workspace built
// after the switch, and a second one — a later navigation, a reload of the
// chunk — must not be handed the same numbers again under ids the store
// already holds.
carried: () => {
const rows = this.session.carriedAnalysis ?? []
this.session.carriedAnalysis = null
return rows
},
contigs: (task) =>
(this.context(task)?.contigs ?? []).map((contig) => ({
name: contig.name,
startBin: contig.startBin,
bins: contig.bins,
length: contig.length,
})),
changed: () => {
this.session.setAnalysis(this.workspace?.hasTasks === true ? [this.workspace.panelEl] : [])
},
}
}
/**
* The starred companion's facts, or `null` when the star is on the lead.
*
* The star (§18.2) says which picture an analysis reads, and it is a second
* idea from the lead on purpose: the lead is what the *session* is of — the
* breadcrumb, the tables, the tracks — and it does not move. What a deck is
* often for is the other question, four replicates on screen and *this* one to
* measure, and answering that by changing the session's subject would rewrite
* half the furniture to run a P(s).
*
* `null` while a freshly starred panel is still fetching its tables, which the
* Analysis column reads as "no context" for the frame or two it takes — the
* honest answer, since the alternative is pricing a task against the lead
* under a star that says otherwise.
*
* And `null` for a task that reads no map, whichever map is starred (§18.1).
* A 1D task reads the session's tracks, and is framed, priced and laid out on
* the session's own map: with the star's, moving the star changed the
* sequences it offered and the grid its lanes were cut on — two answers to
* one question, under a Run that says the star is nothing to it.
*/
private starredFacts(task?: AnalysisTask): AnalysisFacts | null {
if (task !== undefined && !readsMap(task)) return null
return this.session.deck.grid?.starredPanel?.analysisFacts() ?? null
}
/**
* Every map on screen **except the one a context is about** — the star — for a
* task that compares two files (§18.1); a map cannot be a peer of itself.
*
* A map counts **once its file has opened**: its name, its address and its
* bin size are all a peer is asked for, and a companion has them as soon as it
* has drawn. The two tables a run also reads are asked for here as well, once
* per panel and as `readyTargets` asks, since a companion reads them only when
* asked and nothing asked until a batch or a star did — so a deck of two
* offered Reproducibility as *waiting for a second map*. A run waits for them
* (`AnalysisRunner`'s inputs, through `allTargetsReady`), so the first one in a
* fresh deck finds every map rather than none.
*
* The lead is one of them whenever the star is on a companion: it is a map on
* screen like the others, and the runner already compares it. Each is named
* what the reader calls it (§16.10).
*/
private peersOf(uri: string): Array<{ label: string; uri: string; binsize: number }> {
const out: Array<{ label: string; uri: string; binsize: number }> = []
const file = this.session.file
if (file !== null && file.uri !== uri) {
out.push({ label: this.session.mapLabel(file.uri), uri: file.uri, binsize: file.info.binsize ?? 0 })
}
for (const { panel } of this.session.deck.grid?.analysable() ?? []) {
if (panel.analysisFacts() === null) void panel.prepareAnalysis(() => this.workspace?.refresh())
const info = panel.openInfo ?? panel.analysisFacts()?.info ?? null
if (info === null || panel.uri === uri) continue
out.push({ label: this.session.mapLabel(panel.uri), uri: panel.uri, binsize: info.binsize ?? 0 })
}
return out
}
/**
* The maps a task can run against, as the runner's targets.
*
* One list built two ways, which is the point of the parameter: the
* synchronous caller wants whatever is ready *and* wants the rest to start
* reading, and the awaiting one has already waited and must not kick off a
* second round of the same reads. Both give the maps in the grid's order,
* which is the order a reader looking at the grid expects a batch to follow.
*/
private readyTargets(options: { start: boolean }): RunTarget[] {
const out: RunTarget[] = []
const file = this.session.file
let lead: RunTarget | null = null
if (file !== null) {
lead = {
map: LEAD_MAP,
uri: file.uri,
source: file.source,
...cellsOfMap(file.info),
...binningOfMap(file.info),
...this.session.resampleOf(this.session.reader),
...(this.session.lens === null ? {} : { edit: this.session.lens.edit }),
// What the reader calls it (§16.10), which is what every tab, legend,
// lane and table a task makes of it is named by — not the file's name,
// which is only the default a map starts with.
label: this.session.mapLabel(file.uri),
}
}
for (const { map, panel } of this.session.deck.grid?.analysable() ?? []) {
const facts = panel.analysisFacts()
if (facts === null) {
if (options.start) void panel.prepareAnalysis(() => this.workspace?.refresh())
continue
}
out.push({
map,
uri: facts.uri,
source: facts.source,
...cellsOfMap(facts.info),
...binningOfMap(facts.info),
...panel.resampleTarget(),
label: this.session.mapLabel(facts.uri),
})
}
// **In the grid's order**, the first map among the others where its cell
// stands: a batch works through the maps as a reader reads the grid, and
// the drawer's tabs and the all-maps figures and tables follow this list —
// so a map moved on the Contact maps card moves there too (§16.9). The
// companions still reading are left out, and the place is counted among the
// maps that are in.
if (lead !== null) {
const before = this.session.deck.grid?.leadMapIndex ?? 0
const ahead = (this.session.deck.grid?.analysable() ?? [])
.slice(0, before)
.filter(({ map }) => out.some((target) => target.map === map)).length
out.splice(ahead, 0, lead)
}
return out
}
/** The file's circular declarations and origins, as a context carries them. */
private declarations(): { circular: readonly string[]; origins: Record<string, number> } {
return {
circular: this.session.circularStore()?.list() ?? [],
origins: this.session.originStore()?.record() ?? {},
}
}
/**
* What the panel prices and the form fills its dropdowns from.
*
* Rebuilt per call rather than held, and cheaply: it is a walk over the contig
* table, and the alternative is a cached object that is wrong every time a
* track is loaded or the map is panned. `analysis/context.ts` does the work.
*
* The starred map's, or — for a `task` that reads no map — the session's own
* ({@link starredFacts}).
*/
private context(task?: AnalysisTask): AnalysisContext | null {
const file = this.session.file
// **A session with no contact map still has a panel.** Three tasks run
// entirely on loaded tracks — metaplot, track correlation, interval overlap
// — and a 1D browser session (§5.8) is exactly where a reader has the tracks
// and not the matrix. Returning `null` here took the whole column away from
// them, which taught a reader who came in through a bigWig that this app
// does not compare two of them.
//
// The map tasks are not hidden either: they are `waiting`, with a line
// saying to open a contact map. `hasMap` is what tells them apart, and it
// stays false here because `nBins` is zero however real the bin size is.
//
// The **bin size is not zero**, and it used to be. The zero was safe for as
// long as the assumption under it held — that nothing producing a per-bin
// result could be run without a matrix, so no runner would ever see it — and
// the motif search broke that assumption by answering from the *sequence*,
// which is present with or without a map. A zero bin size gives every contig
// zero bins, and a profile registered against that grid is a lane that is
// permanently empty rather than one that is visibly wrong, which is the
// failure nothing reports. So a mapless session is given a browsing grid
// chosen from the assembly's own length ({@link browsingBinsize}); it is a
// resolution to *draw* at and never a claim that anything was measured at
// it, which is exactly what `hasMap` remains false to say.
if (file === null) {
const assembly = this.session.assembly
if (assembly === null) return null
return buildAnalysisContext({
uri: assembly.uri,
memoryKey: this.session.memoryKey(assembly.uri),
layout: 'cool',
binsize: browsingBinsize(assembly.total),
nBins: 0,
hasGenomes: false,
hasWeights: false,
scoreColumns: [],
// The assembly's own sequences, in its own shape, so a region control
// in a browser session lists what is actually open.
contigs: {
length: assembly.contigs.length,
columns: ['name', 'length'],
data: {
name: assembly.contigs.map((contig) => contig.name),
length: Float64Array.from(assembly.contigs.map((contig) => contig.length)),
},
},
genomes: null,
displayGenomes: null,
entries: this.session.annotations?.store.entries ?? [],
framing: null,
blockLoaded: false,
blockBytes: 0,
...this.declarations(),
})
}
// Every coordinate a *map* analysis produces is arithmetic on a fixed bin
// grid (§3.3), so a file without one has nothing those tasks can be computed
// over. A variable-bin file is refused at open long before this, and this is
// the type being honest about a case the reader has already excluded — the
// track tasks still apply, so it is a mapless context rather than none.
// The star, where one has moved: an analysis is priced, framed and run
// against the picture it points at, and the lead only answers when it is
// itself the starred map. `entries` stays the session's, because the tracks
// are the session's however many maps are on screen.
const starred = this.starredFacts(task)
const starredPanel = this.session.deck.grid?.starredPanel ?? null
const info = starred?.info ?? file.info
const uri = starred?.uri ?? file.uri
const panel = starred === null ? this.session.current?.panel : (starredPanel?.map ?? undefined)
// **At the resolution the reader added**, where the lead's map is drawn at
// one (§3.4): every task on it reads the map summed to it, so it is priced,
// and its bins counted, at that resolution rather than at the rung
// underneath. Only with the map on screen — a link's `coarsen=` carried into
// the browser draws no map at it, and the tracks there are binned as before.
const derived = starred === null && panel !== undefined && panel !== null ? this.session.analysisGrid() : null
const binsize = derived?.rung.binsize ?? info.binsize
if (binsize === null || binsize <= 0) return null
const declared = this.declarations()
// The framing a task is **run** on, and so the one that has to carry the
// declarations: the drawer's header was given them and the run was not, so
// a circle ticked on the table was still measured as a line (§8.15).
const framing = this.session.withEditOf(
withCircularNames(
panel === undefined || panel === null ? null : panel.analysisFraming(uri, derived),
declared.circular,
declared.origins,
),
)
const block = panel === undefined || panel === null || derived !== null ? null : panel.analysisBlock()
return buildAnalysisContext({
uri,
memoryKey: this.session.memoryKey(uri),
layout: info.layout.kind,
binsize,
nBins: derived?.grid.nBins ?? info.nBins,
hasGenomes: info.hasGenomes,
hasWeights: info.hasWeights,
scoreColumns: info.scoreColumns,
contigs: starred === null ? (file.contigs?.table ?? null) : starred.contigs.table,
genomes: starred === null ? file.genomes.table : (starred.genomes?.table ?? null),
displayGenomes: starred === null ? file.genomes.display : (starred.genomes?.display ?? null),
entries: this.session.annotations?.store.entries ?? [],
framing,
blockLoaded: block !== null,
blockBytes: block === null ? 0 : block.values.byteLength,
...declared,
// The cells of the map the star is on, not of the session's first file: a
// deck can hold an `.scool` beside a `.cool`, and the per-cell task is
// offered for whichever one an analysis would be measured against.
cells: info.cells.length,
activeCells: info.activeCells.length,
// By name where a subset is ticked, so the command line the console and
// the drawer write can say which cells the map was summed from.
...(info.cells.length > 0 && info.activeCells.length < info.cells.length
? { selectedCells: info.activeCells }
: {}),
resolutions: rungsOf(info.entries).map((rung) => rung.binsize),
// Each at the resolution a run reads it at: on the lead at a resolution the
// reader added, every map whose bins divide it is summed to it too (§3.4).
peers: this.peersOf(uri).map((peer) =>
derived !== null && peer.binsize > 0 && derived.rung.binsize % peer.binsize === 0
? { ...peer, binsize: derived.rung.binsize }
: peer,
),
// The starred map's import, where it was binned from a `.pairs`: Pairs QC
// then has its counts already, and asks for no file (§18.8).
...(info.pairs === undefined
? {}
: {
binnedFrom: {
name: fileBaseLabel(uri),
orientation: info.pairs.orientation !== null,
},
}),
})
}
/**
* Put the workspace down — its worker, its drawer and any job it was
* running — for a file, or a tab, that is going.
*/
drop(): void {
this.workspace?.destroy()
this.workspace = null
}
}
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